Can someone explain me, how will be work the voting system if we will be have thousands markets per day? Does this means that ultimately determine the outcome of a separate event will be several holders of REP?
This is a good/important question. The short answer is, all Rep-holders will not have to vote on every event, as this would of course not scale! Instead, the number of reporters required to vote on an event scales with the volume traded in the event's market. More volume traded = more reports needed. Specific reporters are assigned to events at random, weighted by their Rep holdings. For details, please see
Joey's in-depth blog post on scaling Augur.