Solved it, thanks to Luigi1111 (creator of BBR address generator). Just for the record, you restore from seed by:
1. Building the Boolberry program from source (download does not have the --restore-wallet option)
2. Using the command:
simplewallet --restore-wallet --restore-seed "24-word mnemonic seed"
Luigi helped convert my 25-word seed to a 24-word seed, but in the future he said he might update the generator so it is automatically a 24-word seed.
Edit: Just FYI, but the build-from-source wallet was not updating except for the past 1500 blocks, so my wallet was showing a balance of zero. To get the cold storage funds it was like 5000 blocks back, so I had to go into the source and change the update point to get it to scan the blockchain far back enough. Anyways, it's all finished. Thanks again Luigi1111!
Ok, what did you do in the source? That sounds bad.
Edit: I mean it sounds bad that you had to change something in the source for it to sync