You should be able to define two Managed Templates (
http://www.awesomeminer.com/help/managedtemplate.aspx). One with ccminer on Auto-download (which is ccminer-spmod). The other one ccminer with custom path, where you point to your ccminer-Alexis.
Then you should be able to apply these template to one or many Managed Miners in a single operation.
Even if I add support for ccminer-Alexis in addition to ccminer-spmod - you would still be required to do the same switching with templates unless you manually go into each miner.
... but doesn't this mean that we don't get the automatic profit switching ability

?
My aim it to have it switch between ccminer and ccminer-fork based on whichever pool which has been selected from the pool-group, by the profit-switcher.
I hope there is a way to achieve this.

EDIT: Also with ccminer (and same if I load in a ccminer fork) I have issue where I cannot send parameter for the miner by using the pool settings dialogue. example: maybe a specific intensity or worksize, or similar - to be used for a pool. I have sent an email about this to info@awesomeminer...... maybe I just do not understand how to achieve this. I see I can do it with the managed miner, and a template ..... but then *I* have to switch it - but I would like the profit switcher to do it for me.
For the profit switcher you can only use one version of ccminer. Either you use the built-in ccminer, or you configure your profit profile to use your custom ccminer-alexis. You cannot use both at the same time in the profit switcher at the moment, but this will change soon if I add support for ccminer-Alexis as well.
Device profile settings cannot be set per pool, but you can configure device profile settings for each mining software being used by the profit switcher if you edit your Profit Profile.