Was your account verified or did you at least send wires from accounts in your name?
Make sure to save all information you have about transactions that happened in your account and don't lose access to the email you are registered with at BTC-E.
Even in case the money is confiscated you will be more than likely be refunded by the authorities.
I have just verified my account by passport and utility bill.
i never sent any money to banks or from banks, I've used my bitcoins from blockchain wallet to exchange.