I have $200,000$ Bitcoin in BTC-E.. about 2/3 my net worth..I have always been legit, even went out of my way and paid upward of $25,000 taxes to USGOV when I wire transferred out of BTC-E year or two ago.. There is no legal basis to steal our money, I like to think it can't be done.
I suggest wait for the dust to settle there will most likely be a way to claim your coins back, otherwise lawyer up.