I keep some long term investment coins in my mtgox account (40ish) as I hope that these over time will rise considerably, but I day trade with around $3000. when the bot is executing trades, I want it to play around with my $3000 but leave my 40btc alone, will the new version do this? If so u have a sale!
Hi Micheal,
Yes, the new version V2 (which will be a free upgrade to early adopters), which will be out in the next 2-3 weeks, will allow you to specify a reserve either as USD or BTC; if all goes well you will also be able to specify a fractional reserve of holdings

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If you would like to purchase, please email me at
sales@BTCBots.com 
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Anything else I can do for you, please let me know!
Pablo.