that's BTC-E's problem. contact them to resolve it.
Mine stuck too 0 conf 7+ hours now, the odd thing is that there are a lot of small blocks <100 even <50 kb why they are not filled to 250 with theese transactions. I don't get it if there is room why not use it ?!
as the block becomes more filled up, the default bitcoin implementation behavior is to make it more and more expensive to include a transaction. this it to prevent spammers from filling up the blockchain and forcing everyone to potentially store the data forever.