no problem at first sight with windows compilation. the usual instructions are ok.
git clone https://github.com/aeonix/aeon.git aeon-0.9.13.0
cd aeon-0.9.13.0
mkdir build
cd build
cmake -G "Visual Studio 14 2015 Win64" -DBOOST_ROOT=c:/local/boost_1_64_0 ..
msbuild Project.sln /p:Configuration=Release /m
tested with: gitshell, boost 1.64 static, python 3.5, cmake 3.8.0, microsoft visual studio 2015 rtm
Daberti's guide is still relevant and useful :
https://bitcointalk.org/index.php?topic=641696.msg18754693#msg18754693