This problem is inherent in the way eligius pays out. Each block can pay out a maximum of 50BTC + Fees (because all payouts are done with the generation transaction). So if there is more than 50BTC to be paid, it's impossible and some of the payouts have to be enqueued for the next block, but the next block will have the same problem as the eligius fees are very small and with each block, the miners gain ~50BTC more to be paid out. So if there is a big backlog of payouts, it will take some time.

If I remember correctly, there's a special wallet where any generations that are created in a block but can't be paid out yet because there is no user with >1BTC balance are sent. It should be possible for luke-jr to send a standard transaction from that wallet to GimEEE to settle this once and for all.