I was looking for solution of my problem and find this thread,I also have such situation where I use BTC address from Ledger Nano S and I am sure it is correct and transaction is confirmed,but I not see any sign of transaction or balance change in Ledger Bitcoin Wallet or when using Electrum.

I wonder if OP is found a solution for this problem.More info posted here : https://bitcointalk.org/index.php?topic=2578278.0