Try an older firmware. I have recovered hundreds of miners with issues by rolling back the November 17th firmware, it has a lot of problems.
I have tried firmware
Antminer-S9-all-
201705031838-650M-user-Update2UBI-NF.tar.gz
and
Antminer-S9-all-
201704270135-autofreq-user-Update2UBI-NF.tar.gz
from
https://shop.bitmain.com/support.htm?pid=00720161126080548570Q2tDBXAH065DBut the problem persists.