I am aware of some bugs in the current implementation of the pool using mmfce. I have tried to plug as many of them as possible, I think I've gotten most of the issues with the missing block payouts.
Instead of trying to continuously fix mmfce, I'm working on a new pool software, which should work much better and run much smoother than this version. Until I get the new version out, I will continue to patch this one up as much as I can.
BigVern