Thanks!
When I edit the mining pools in the IP dashboard they work just fine. When I add a mining pool into Awesome Miner and then change the mining pool for the Baikal BK X via awesomeminer the mining pool info seems to all be correct, but the BK X then processes the wrong algorithm.
For example for quark zpool mining pool when initiated through awesomeminer, the BK X processes X11 instead. I can't figure out how to change or fix it.