Thanks!
So I went back to the Baikal IP dashboard, deleted all the mining pools, and added the pools I wanted. They work fine on the Baikal unit. Then I went to awesome miner and added the same info on there. When I try to re-prioritize the pools in AM, it works (kind of), then the miner will process the new pool BUT with the incorrect algorithm. For example I made a Nist5 pool the top priority, the miner switched to that pool, and then starting mining on that pool, but was mining as if it was a Quark algo.