My auto payouts are going through, but it's been a while since anything has gotten to Cryptsy.
More worryingly, 2 auto-payouts that went through overnight are showing only 1 and 2 confirmations on Cryptsy. I hope the problem is on cryptsy's end. Since I'm sending it straight there I dunno where the issue is.
It seems like cryptsy is having problems with Dogecoin right now - I had some coins that showed up about an hour after the balance was removed from my pool account on cryptsy as having a small number of confirms, but it took over six hours for them to actually let me trade with them. I also had an auto payout of about 10k doge go to cryptsy overnight and right now they are showing 453 confirms and no sign of letting me sell them. We probably just need to be patient since cryptsy seems to be having problems with confirming deposits and the auto payouts seem to take a while for the pool, probably due to load.