But still, your first post still states:
You should presumably remove this alpha test client if your release client will be built from scratch? No point talking about a Nxt clone anymore.
Lastly, why do you still have a petition open to demand the release of the Nxt source code, if:
1. You have successfully decompiled the code (despite incorrect claims of heavy obfuscation) and produced a clone that compiles and runs successfully on the NXT network
2. You are starting NEX development from scratch
You should therefore remove this section as it's not applicable to NEX:
Sign the petition to demand Nxt release source code so we can begin our journey: https://bitcointalk.org/index.php?topic=422590.msg4598983
Decompilation does take time and required several kinds of decompiler and manual editing to perform.
The source code is all made available for anyone who wants to make a copy. Or anyone who wants to permanently destroy Nxt. IMHO, security by obfuscation is really not a sound approach.