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Ok well I did my best but you really don't want to try and read. You just build your own walls and I can't do much against that...
Do you agree on the fact that matter is made of atoms?
How do you think this theory was created? Where do you think it comes from? Empirical data?
Absolutely not.
Because there was no data... The technical means of the 19th century didn't allow John Dalton to imagine experiments. There was no experiments! He just imagined a theory and it answered some good questions, seemed logical, had no counter examples.
You seem to believe science is either "proven" or "not proven" but that's not the case... I don't know how to tell you otherwise: it doesn't work that way. That's all.
EDIT: To be clear.If there is an experiment to test your theory then empirical data is essential.
If there is no experiment to test your theory, then empirical data is meaningless but it doesn't mean the theory is.
Is it easy enough to understand like this?