Hmmm. You'll have to rebuild the DB, I suppose. I'd recommend posting logs first before doing that, just to be safe.
Also, just confirming, are you running 0.96.5?
I don't remember the version offhand...may have been 95.x.
I'm probably not going to investigate or rectify the situation, as the transfer took place, so I don't need to use the armory wallet any more.