I actually had .409 TAKEN from my coinjar account...
Is your balance in BTC still 0.409 in coinjar? It looks like coinjar use a sharewallet type system - so you can put btc into your account using their wallet and its technically theirs, but your balance should still show 0.409.
If its no 0 balance, did your machine do a withdrawal? Did you have 2 factor authentication on?
You sent a support ticket to coinjar yet?