So the current plan, for the next few days (at least) is to pay out users as we have the funds.  Anyone over the threshold (0.01btc) will be eligible for payouts, and we'll select users who haven't been paid in the longest time first.  We'll pay out all of the funds we have at the time, and run another set of payouts every time a cryptsy deposit clears.  We'll likely be running them twice a day (we'll see).