Nice work! Thank You 
But i have one more question.
How to move the newly created file to a new location after every loop?
Really? Is it that hard to manually move the text files instead of automating it? But i have one more question.
How to move the newly created file to a new location after every loop?
Ok, just add this line to the batch file's first three lines and %directory% after each %output%, it should look like this:
Code:
@set directory=C:\test\
Code:
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set loop=0
:start
%command% -i %input% -o %directory%1%output%
set /a loop=%loop%+1
if "%loop%"=="100" goto next
goto start
:next
%command% -i %input% -o %directory%2%output%
set /a loop=%loop%+1
if "%loop%"=="200" goto next2
goto next
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set loop=0
:start
%command% -i %input% -o %directory%1%output%
set /a loop=%loop%+1
if "%loop%"=="100" goto next
goto start
:next
%command% -i %input% -o %directory%2%output%
set /a loop=%loop%+1
if "%loop%"=="200" goto next2
goto next
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Make sure that 'test' folder under C:\ is already existing or it will fail to write.