While I dont have any risers laying around my motherboard has PCI-E 2.0 x16 slot running at x2 and a heavily overclocked GTX 780.
Here is my config for my GTX 780: cudaminer.exe -q -i 0 -m 0 -H 2 -l T12x24
PCI-E 3.0 x16: ~715Khash/s with a bus usage of ~13%
PCI-E 2.0 x16(x2): ~685Khash/s with a bus usage of ~40-50% (I forgot the exact number)
If you have any more questions feel free to ask.
Thanks Takashi. This along with jstabb's riser analysis confirms my suspicions that 3.0 slots are generally better than 2.0 slots for cudaminer.