Okay guys. Got a pretty speedy reply from BTC-e.
This is what they said-- READ FROM THE BOTTOM UP:
Hello!
We are sorry but your money was transferred out from BTC-E.
Withdrawal has been confirmed with your mail.
We can't refund and return your money.
We recommend you change your password, e-mail and set 2fa protection.
We can provide you IP logs of potential hacker:
178 login success login (ME)
07.04.14
00:13
177 edit pass reset (ME)
07.04.14
00:13
176 logout logout use logout button 62.4.8.78 - Hacker
07.04.14
00:12
175 login success login 62.4.8.78 - Hacker
07.04.14
00:04
174 logout logout use logout button 62.4.8.72 - Hacker
05.04.14
00:10
173 login success login 62.4.8.72 - Hacker
05.04.14
00:07
172 edit pass reset 62.4.8.72 - Hacker
05.04.14
00:07
Okay, so the block of red is when the "hacker" changed my password so I couldn't log in. Green I guess is them logging in and out to check they have access. Blue is when they logged in, withdrew the coins and then logged out again. And finally, orange is me resetting my password (as they changed it) and logging back in to find all my funds gone.
So from this we've found that the ip 62.4.8.72 is the malicious one. And they are located somewhere in France near Paris. I'm going to contact the owner of the IP range and do some digging. If anyone has any other ideas on what can be done, feel free to PM me or just post on here.