I've honestly had this thread open in a tab for the last 5 days & somehow still missed the announcement that transfers are being accepted @ Bittrex. FML...
I just transferred to Bittrex, but not seeing any confirmations yet...

Has the new wallet been posted up? link to source on OP still shows original Github repo (last commit 2 months ago)
Did you get some confirmations (Bittrex will confirm your deposit after 20 confirmations) ?
Some users reported network synchronization issues with computer wallets.
If required, you will find some useful information here:
https://bitcointalk.org/index.php?topic=483847.msg6222773#msg6222773Just checked: finally got 4 confirmations on Bittrex!! Panic subsiding now...
On a separate note, has anyone had success building the new wallet from source? For Linux, following the build-unix.txt in the repo leads to an error
$ make -f makefile.unix
...
net.cpp:19:22: fatal error: miniwget.h: No such file or directory
#include
^
compilation terminated.
make: *** [obj/net.o] Error 1
Looks like there is a linux specific makefile that is related:
makefile.linux-mingwRunning this via
$ make -f makefile.linux-mingw
gives several errors, so it seems there is a step missing, but no specifc readme/txt file for building linux.
Any linux folks successfully build wallet yet?