My wallet (9.4.6) is showing 3 confirmations and Cryptsy shows none.
Would not be unusual for cryptsy to ignore the fork, wait for a big mess, then fix it maybe a week or so from now... They're not pro-active at all.
Did you dump your chain info and re-pull just to be sure? I think there is a newer version 9.4.8... Might be you on bad fork reading bad fork from other people on bad fork...
See post below this one for version.