I don't see the religious references before but when you said that I now see some. The fact is that tomoe is old and traditional shape and it is bound to have some references. Someone just posted a star-trek reference which oddly resembles the current logo. I would prefer a more modernistic styling.
+1 I also didn't see 666 reference before. and although I don't thing the present interim logo is bad i somehow feel it can be improved.