I have also the problem!
I know the dodgy of deposit to btc-e so I firstly tried $6000+ and it's successfully being in my account the next day.
So I trusted it more then sent another large amount $17000+. But this time it has been nearly 48 hours it still doesn't appear to my account.
The first deposit resulted in money hold, 700 hours, counted down a bit when I sent the second one. I noticed the next day of the second deposit, the money hold hours was reset to 700 hours again, that means the money has arrived there but just being hidden for unknown reason!
In addition, I created a ticket and sent my id utility docs immediately when I saw the money hold first time.