China is outlawing it for physical transactions. France is figuring out what to do (is it money or something else?).
I am sure some governments might want to DDOS or somehow otherwise attack it if lots of transactions are happening. But really these days they are more interested in intercepting encrypted communications (see the Comodo and Diginotar CA hacks where Iran was intercepting encrypted gmail traffic).
I would think that intelligence agencies would be more interested in letting bitcoin run, and in building analytic tools to watch the blocks and try to deduce patterns around who is transacting with whom. Combine this analysis with IP logs and they may be able to slowly figure out some "people of interest". For example, if they arrest a criminal who has a wallet, then they know their keys and historical transactions, and this can be traced to see which receivers got their coins. With enough seized wallets they then start to know some IPs or keys of other bad players. Maybe this won't lead to finding people, but it could be used as evidence in prosecutions once someone is arrested.
$0.02.
oops, sorry, I mean 0.002 BTC